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    Analysis and kinase-mediated decay of RNAs with 5´-hydroxyl termini

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    http://hdl.handle.net/10968/1588
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    Analysis and kinase-mediated decay of RNAs with 5´-hydroxyl termini (9.453Mb)
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    Abstract
    RNA cleavage by metal ion-independent endoribonucleases and self-cleaving ribozymes produces RNA fragments with 5 ́-hydroxyl (5 ́-OH) and 2 ́,3 ́-cyclic phosphate termini. However, RNAs with 5 ́-OH termini (5 ́-OH RNAs) are not detected by conventional sequencing methods, and 5 ́-OH RNAs cannot be directly degraded by canonical 5 ́-phosphate-dependent 5 ́→3 ́ exoribonucleases. To identify new 5 ́-OH RNA fragments, I exploited the unique ligation mechanism of E. coli RtcB RNA ligase to develop 5OH-seq, a novel method to capture and sequence 5 ́-OH RNAs. I applied 5OH-seq to budding yeast and ...
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    Author(s)
    Peach, Sally

    Advisor(s)
    Hesselberth, Jay R.

    Date Submitted
    2016
    Collections
    • 2012 - 2016
    • Theses and Dissertations - School of Medicine

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